HMMBUILD help

A brief introduction to HMMBUILD
The program HMMBUILD, belonging to the HMMER package, generates a profile HMM from a multiple sequence alignment. Profile HMMs are statistical models of the primary structure consensus of a sequence family. A profile HMM can typically be used in homology detection by comparing a query profile HMM against a DNA or protein sequence library.
For further details, see the HMMER homepage.

Availability in NPS@
HMMBUILD is available :

Parameters
First you have to choose the profile HMM construction options :

NPS@ HMMBUILD output
The HMMBUILD output allows you to follow your analysis with a profile HMM search against a protein library thanks to HMMSEARCH.

References


User : public@34.228.55.57. Last modification time : Thu Jan 14 18:36:27 2016. Current time : Mon Mar 25 09:54:49 2019