If you use this service, could you please send us a mail to npsang@ibcp.fr with details about your usage of the NPSA service (tools used, frequency, type of sequence, ..) ? Could you explain what makes this service unique for you ? Could you please add information about your country and your laboratory ? Thanks

HMMBUILD help

A brief introduction to HMMBUILD
The program HMMBUILD, belonging to the HMMER package, generates a profile HMM from a multiple sequence alignment. Profile HMMs are statistical models of the primary structure consensus of a sequence family. A profile HMM can typically be used in homology detection by comparing a query profile HMM against a DNA or protein sequence library.
For further details, see the HMMER homepage.

Availability in NPS@
HMMBUILD is available :

Parameters
First you have to choose the profile HMM construction options :

NPS@ HMMBUILD output
The HMMBUILD output allows you to follow your analysis with a profile HMM search against a protein library thanks to HMMSEARCH.

References


User : public Last modification time : Mon Mar 15 15:24:36 2021. Current time : Wed Dec 4 20:07:03 2024