If you use this service, could you please send us a mail to npsang@ibcp.fr with details about your usage of the NPSA service (tools used, frequency, type of sequence, ..) ?
Could you explain what makes this service unique for you ?
Could you please add information about your country and your laboratory ?
Thanks
HMMBUILD help
A brief introduction to HMMBUILD
The program HMMBUILD, belonging to the HMMER package, generates a profile HMM from a multiple sequence alignment. Profile HMMs are statistical
models of the primary structure consensus of a sequence family. A profile HMM can typically be used in homology detection by comparing a query
profile HMM against a DNA or protein sequence library.
For further details, see the HMMER homepage.
Availability in NPS@
HMMBUILD is available :
At URL : https://npsa-prabi.ibcp.fr/NPSA/npsa_hmmbuild.html.
The input multiple protein alignment must be in clustalw format.
For hmmbuild, the standard character set for proteins is {A, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, T, V, W, Y}.