A brief introduction to SIMPA96
SIMPA96 is a nearest neighbor secondary structure prediction method. It's based on the homologue method described by
Levin et al.
Availability in NPS@
This method is available :
No parameter required
NPS@ SIMPA96 output example
You can see:
- MPSA/ANTHEPROT link to
view the prediction in these local protein sequence analysis
- The color coded prediction (a sequence line and below the corresponding predicted states).
- The sequence length.
- The percentage of each secondary element.
- Two graphics. The first to better visualize the prediction. In the second, there are the reliability scores for each
- The paramaters used.
- Link on the prediction result text file.