[Abstract] [NPS@ help] [Original server]

Paste a multiple protein alignment in clustalw format below : help

Alignment boundaries :
If new alignment boundaries, keep sequences with at least residues in alignment region.

Profile HMM construction options :
Alignment mode :
Weighting mode :
If blosum weighting mode, you can choose percent identity (--idlevel, fraction from 0 to 1):
Switching behavior (weighting mode) (--pbswitch, positive int) :

Profile HMM calibration options :
Number of synthetic sequences (preferably upper than 1000) (--num, positive int) :
Gaussian mean (--mean, positive real) :
Gaussian standard deviation (--sd, positive real) :