Database : Non-redundant protein sequences (UniProtKB 60 %identity maximum + PDB sequences) Protein Data Bank (PDB) sequences Maximum 95% identity Protein Data Bank (PDB) sequences Maximum 25% identity Protein Data Bank (PDB) sequences Swiss-Prot (UniProtKB/Swiss-Prot) UniProt Knowledge Base (Swiss-Prot + TrEMBL)

Sequence name (optional) :
Paste a protein sequence below : help

FASTA parameters:
Number of best scores to display (-b, int) : 50010002000 10000
Number of alignments to show (-d, int) : 50010002000 10000
Expectation value upper limit (-E, real) : 1e-06 1e-03 1.0 10.0 100.0 1000.0 10000.0
Expectation value lower limit (-F, real) : 01e-061e-031.010.0100.0
Turn off histogram display (-H) :
Report long sequence description in alignments (-L) :
Matrix (-s) : BLOSUM50BLOSUM62BLOSUM80 PAM120PAM250
ktup : 12
Threshold for band optimization (-c) :
Penalty for the first residue in a gap (-f, real) :
Penalty for adfditional residues in a gap (-g, real) :
Width for band optimization (-y, int) : (16 for protein and ktup=2, 32 for protein ktup=1)
-D, -m, -N, -q/-Q, -r, -S,-T, -w, -x, -z, -Z, and -1 options are not supported.