CLUSTALW

[Abstract] [NPS@ help] [Original server]

Paste a protein sequence databank in Pearson/Fasta format below : help

All sequence names must be different !

Output width :

CLUSTALW Parameters
Output format :
Output oder :

Pairwise alignment type :
Fast pairwise alignment parameters
Slow pairwise alignment parameters
K-tuple (word) size :
Number of top diagonals :
Window size :
Gap penalty :
Scoring method : 		Protein weight matrix :
Gap openig penalty :
Gap extension penalty :

Multiple Alignment Parameters :
Weight matrix :
Gap opening penalty :
Gap extension penalty :
Residue-specific gap penalties OFF :
Hydrophilic gaps OFF :
Hydrophilic residues :
Percent of identity for delay :
Gap separation distance :
No end gap separation penalty :